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Abstract While the positive relationship between plant diversity and ecosystem functioning is frequently observed and often attributed to direct plant–plant interactions, it remains unclear whether and how the effects of plant diversity endure through soil legacy effects, particularly at the level of genotypic diversity. We manipulated the genotypic diversity ofScirpus mariqueterand tested its soil legacy effects on a conspecific phytometer under low‐ and high‐water availability conditions. We found that genotypic diversity enhanced phytometer productivity through soil legacies, with stronger effects under low‐water availability conditions, improving its resistance to water stress. Moreover, this effect was attributed to the association between asexual and sexual reproductive strategies by increasing ramet number to ensure plant survival under low‐water availability and promoting sexual reproduction to escape stress. The observed diversity effects were primarily associated with increased levels of microbial biomass in soils trained by populations with diverse genotypes. Our findings highlight the importance of plant genotypic diversity in modulating ecosystem functioning through soil legacies and call for management measures that promote genetic diversity to make ecosystems sustainable in the face of climate change. 

Abstract Cycads represent one of the most ancient lineages of living seed plants. Identifying genomic features uniquely shared by cycads and other extant seed plants, but not non-seed-producing plants, may shed light on the origin of key innovations, as well as the early diversification of seed plants. Here, we report the 10.5-Gb reference genome ofCycas panzhihuaensis, complemented by the transcriptomes of 339 cycad species. Nuclear and plastid phylogenomic analyses strongly suggest that cycads andGinkgoform a clade sister to all other living gymnosperms, in contrast to mitochondrial data, which place cycads alone in this position. We found evidence for an ancient whole-genome duplication in the common ancestor of extant gymnosperms. TheCycasgenome contains four homologues of thefitDgene family that were likely acquired via horizontal gene transfer from fungi, and these genes confer herbivore resistance in cycads. The male-specific region of the Y chromosome ofC. panzhihuaensiscontains a MADS-box transcription factor expressed exclusively in male cones that is similar to a system reported inGinkgo, suggesting that a sex determination mechanism controlled by MADS-box genes may have originated in the common ancestor of cycads andGinkgo. TheC. panzhihuaensisgenome provides an important new resource of broad utility for biologists.